Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RH34_PETMAUncharacterized protein. (189 aa)    
Predicted Functional Partners:
S4RS03_PETMA
Methyltransferase like 16.
 
      0.900
S4RRX8_PETMA
WT1 associated protein.
      
 0.665
S4RX97_PETMA
Uncharacterized protein.
      
 0.664
S4RVE0_PETMA
AlkB homolog 5, RNA demethylase.
   
  
 0.656
S4RXG9_PETMA
Methyltransferase like 5.
      
 0.647
S4RU24_PETMA
Methyltransferase like 3; Belongs to the MT-A70-like family.
   
  
 0.644
YTHDC2
YTH domain containing 2.
      
 0.617
S4RYP4_PETMA
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.615
S4R881_PETMA
Exosome component 2.
      
 0.600
S4RU55_PETMA
YTH N(6)-methyladenosine RNA binding protein 2.
      
 0.560
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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