STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RH56_PETMAUncharacterized protein. (115 aa)    
Predicted Functional Partners:
S4RDW7_PETMA
Uncharacterized protein.
   
 
 0.999
S4RDD2_PETMA
RRM domain-containing protein.
   
 
 0.996
S4RT04_PETMA
Helicase C-terminal domain-containing protein.
   
 
 0.996
S4R731_PETMA
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.994
S4RQW0_PETMA
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 
 0.992
S4RSV7_PETMA
Ribosomal RNA processing 12 homolog.
   
 
 0.992
S4RSV3_PETMA
Pescadillo.
   
 
 0.990
S4R7L5_PETMA
GN3L_Grn1 domain-containing protein.
   
 
 0.989
S4R990_PETMA
RNA binding motif protein 34.
   
 
 0.986
S4RU29_PETMA
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.986
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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