S4RHA2_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4RHA2_PETMA

Uncharacterized protein. (293 aa)

Predicted Functional Partners:

S4RNL4_PETMA

0.953

S4RQW7_PETMA

0.949

UBB

0.925

S4RP44_PETMA

0.891

CLSPN

0.875

S4RSA6_PETMA

0.847

S4RLR5_PETMA

0.843

S4RJE0_PETMA

0.833

S4RF75_PETMA

0.819

S4RL11_PETMA

0.770

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLSPN	S4RHA2_PETMA	ENSPMAP00000006940	ENSPMAP00000004584	Claspin.	Uncharacterized protein.	0.875
S4RF75_PETMA	S4RHA2_PETMA	ENSPMAP00000003857	ENSPMAP00000004584	Potassium channel tetramerization domain containing 10.	Uncharacterized protein.	0.819
S4RHA2_PETMA	CLSPN	ENSPMAP00000004584	ENSPMAP00000006940	Uncharacterized protein.	Claspin.	0.875
S4RHA2_PETMA	S4RF75_PETMA	ENSPMAP00000004584	ENSPMAP00000003857	Uncharacterized protein.	Potassium channel tetramerization domain containing 10.	0.819
S4RHA2_PETMA	S4RJE0_PETMA	ENSPMAP00000004584	ENSPMAP00000005322	Uncharacterized protein.	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	0.833
S4RHA2_PETMA	S4RL11_PETMA	ENSPMAP00000004584	ENSPMAP00000005896	Uncharacterized protein.	WW domain-containing protein.	0.770
S4RHA2_PETMA	S4RLR5_PETMA	ENSPMAP00000004584	ENSPMAP00000006151	Uncharacterized protein.	BTB (POZ) domain containing 9.	0.843
S4RHA2_PETMA	S4RNL4_PETMA	ENSPMAP00000004584	ENSPMAP00000006800	Uncharacterized protein.	WWE domain-containing protein.	0.953
S4RHA2_PETMA	S4RP44_PETMA	ENSPMAP00000004584	ENSPMAP00000006980	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.891
S4RHA2_PETMA	S4RQW7_PETMA	ENSPMAP00000004584	ENSPMAP00000007603	Uncharacterized protein.	BRCT domain-containing protein.	0.949
S4RHA2_PETMA	S4RSA6_PETMA	ENSPMAP00000004584	ENSPMAP00000008095	Uncharacterized protein.	Uncharacterized protein.	0.847
S4RHA2_PETMA	UBB	ENSPMAP00000004584	ENSPMAP00000007938	Uncharacterized protein.	Ubiquitin B.	0.925
S4RJE0_PETMA	S4RHA2_PETMA	ENSPMAP00000005322	ENSPMAP00000004584	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.833
S4RJE0_PETMA	S4RL11_PETMA	ENSPMAP00000005322	ENSPMAP00000005896	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	WW domain-containing protein.	0.503
S4RJE0_PETMA	S4RNL4_PETMA	ENSPMAP00000005322	ENSPMAP00000006800	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	WWE domain-containing protein.	0.553
S4RJE0_PETMA	S4RP44_PETMA	ENSPMAP00000005322	ENSPMAP00000006980	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	Ubiquitin-like domain-containing protein.	0.994
S4RJE0_PETMA	UBB	ENSPMAP00000005322	ENSPMAP00000007938	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	Ubiquitin B.	0.989
S4RL11_PETMA	S4RHA2_PETMA	ENSPMAP00000005896	ENSPMAP00000004584	WW domain-containing protein.	Uncharacterized protein.	0.770
S4RL11_PETMA	S4RJE0_PETMA	ENSPMAP00000005896	ENSPMAP00000005322	WW domain-containing protein.	Ubiquitin specific peptidase 13; Belongs to the peptidase C19 family.	0.503
S4RL11_PETMA	S4RNL4_PETMA	ENSPMAP00000005896	ENSPMAP00000006800	WW domain-containing protein.	WWE domain-containing protein.	0.551