Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RHC4_PETMAHERPUD family member 2. (381 aa)    
Predicted Functional Partners:
AMFR
Uncharacterized protein.
   
 
 0.795
S4RN76_PETMA
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.795
S4RML2_PETMA
CUE domain-containing protein.
   
 
 0.703
S4R7P4_PETMA
Family with sequence similarity 8 member A1b.
    
 
 0.678
S4RM89_PETMA
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
  
 0.671
S4RG30_PETMA
Peptidase_M50 domain-containing protein.
      
 0.658
S4RIP9_PETMA
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 
 0.655
S4R473_PETMA
Zinc finger protein 622.
      
 0.652
S4RQQ7_PETMA
BZIP domain-containing protein.
   
 
 0.627
S4RIM9_PETMA
Nucleobindin 2b.
      
 0.609
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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