STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RHF9_PETMAUbiquitin carboxyl-terminal hydrolase. (967 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
 0.813
S4RMR7_PETMA
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.767
S4R848_PETMA
Uncharacterized protein.
   
 
 0.728
S4RS66_PETMA
TNF receptor-associated factor.
    
 0.680
S4S029_PETMA
USP domain-containing protein; Belongs to the peptidase C19 family.
 
  
  
0.660
S4RK87_PETMA
E3 ubiquitin-protein ligase.
    
 0.657
S4RTM7_PETMA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.645
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.644
S4RV88_PETMA
Mothers against decapentaplegic homolog.
    
 0.622
S4RCZ8_PETMA
Baculoviral IAP repeat containing 2.
   
 0.615
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.