STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RHG4_PETMAZgc:100832. (163 aa)    
Predicted Functional Partners:
S4R853_PETMA
Uncharacterized protein.
     
 0.854
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
    
 0.835
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
     
 0.829
S4RQM7_PETMA
Seryl-tRNA synthetase.
    
  0.786
S4R5F5_PETMA
WD_REPEATS_REGION domain-containing protein.
    
 0.761
S4RUD3_PETMA
F-box and WD repeat domain containing 7.
    
 0.761
WDR86
WD_REPEATS_REGION domain-containing protein.
    
 0.753
WDR86-2
WD repeat domain 86.
    
 0.753
S4RWV0_PETMA
F-box and WD repeat domain containing 2.
    
 0.740
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.732
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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