STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RHW6_PETMATetratricopeptide repeat domain 1. (235 aa)    
Predicted Functional Partners:
S4R6D5_PETMA
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
   
    0.654
S4R997_PETMA
Ring finger protein 41.
    
   0.600
S4RTH1_PETMA
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.495
S4REL5_PETMA
Uncharacterized protein.
    
 
 0.467
S4RUS6_PETMA
Motile sperm domain containing 1.
    
 
 0.405
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.