STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RI31_PETMAHelicase, POLQ like. (844 aa)    
Predicted Functional Partners:
S4RDE2_PETMA
Helicase ATP-binding domain-containing protein.
   
 
 0.991
S4REK3_PETMA
Helicase ATP-binding domain-containing protein.
   
 
 0.991
FANCM
Uncharacterized protein.
   
 
 0.991
S4RRM4_PETMA
Exonuclease 1.
  
 
 0.887
TWNK
Twinkle mtDNA helicase.
     
 0.878
S4RPK0_PETMA
Uncharacterized protein.
   
 0.869
S4RZ01_PETMA
Uncharacterized protein.
   
 0.834
S4RTJ9_PETMA
Acyl-CoA_dh_N domain-containing protein.
   
 
  0.820
S4RPZ6_PETMA
MRE11 homolog A, double strand break repair nuclease.
  
 0.818
S4RBC3_PETMA
Uncharacterized protein.
  
 
 0.787
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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