Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RI43_PETMAUncharacterized protein. (168 aa)    
Predicted Functional Partners:
S4RG04_PETMA
Uncharacterized protein.
    
   0.846
S4RHF7_PETMA
ETHE1 persulfide dioxygenase.
      
 0.665
MED20
Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.637
NEK9
NIMA related kinase 9.
      
 0.617
S4RQ09_PETMA
Uncharacterized protein.
      
 0.617
S4R6G0_PETMA
SprT-like domain-containing protein.
      
 0.593
S4RP86_PETMA
Uncharacterized protein.
      
 0.588
S4RDN2_PETMA
USP domain-containing protein; Belongs to the peptidase C19 family.
      
 0.520
POC1A
WD_REPEATS_REGION domain-containing protein.
     
 0.502
S4RSA5_PETMA
Uncharacterized protein.
     
 0.480
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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