STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RI47_PETMAOrange domain-containing protein. (241 aa)    
Predicted Functional Partners:
S4RMQ1_PETMA
FA complementation group L.
    
  0.752
S4RV86_PETMA
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.744
CENPS-CORT
CENPS-CORT readthrough.
     
 0.610
NEUROG1
Neurogenin 1.
    
 0.572
S4RSW9_PETMA
Neuronal differentiation 1.
    
 0.572
S4RGV3_PETMA
BZIP domain-containing protein.
    
 0.567
S4RH78_PETMA
BHLH domain-containing protein.
    
 0.556
S4RH05_PETMA
Cryptochrome circadian regulator 1a.
   
 
 0.494
S4RCM1_PETMA
Uncharacterized protein.
    
 0.484
S4RTR1_PETMA
Retinoid X receptor, gamma b.
   
 
 0.431
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.