STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RI53_PETMAMetastasis associated 1 family, member 3. (713 aa)    
Predicted Functional Partners:
S4RM85_PETMA
ARID domain-containing protein.
    
 0.981
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 0.981
S4RRX9_PETMA
Retinoblastoma binding protein 4, like.
   
 0.981
S4RIY0_PETMA
CHDNT domain-containing protein.
   
 0.943
S4R5I2_PETMA
MBD domain-containing protein.
   
 0.897
S4RBV4_PETMA
Methyl-CpG binding domain protein 2.
   
 0.897
S4R759_PETMA
GATA zinc finger domain containing 2B.
   
 0.874
S4RV40_PETMA
Hist_deacetyl domain-containing protein.
    
 0.828
S4RWT0_PETMA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.828
S4RXT2_PETMA
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.828
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.