Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RIG8_PETMACAP-ZIP_m domain-containing protein. (1050 aa)    
Predicted Functional Partners:
S4RCJ6_PETMA
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.977
S4RGL3_PETMA
WASH complex subunit 3.
    
 
 0.972
S4RDB4_PETMA
WASH complex subunit 4.
   
 
 0.971
S4RWC9_PETMA
WASH complex subunit 5.
   
 
 0.969
S4R4P9_PETMA
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.958
S4RE17_PETMA
Si:dkey-119f1.1.
   
 
 0.876
S4RW17_PETMA
NSE1 homolog, SMC5-SMC6 complex component.
    
 
 0.858
S4RJQ7_PETMA
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 
 0.841
S4R8G2_PETMA
DNA topoisomerase II binding protein 1.
    
 
 0.779
S4RKW0_PETMA
VPS26, retromer complex component A.
    
 
 0.766
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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