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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RIG8_PETMACAP-ZIP_m domain-containing protein. (1050 aa)    
Predicted Functional Partners:
S4RWC9_PETMA
WASH complex subunit 5.
   
 
 0.864
S4RGL3_PETMA
WASH complex subunit 3.
    
 
 0.855
S4RDB4_PETMA
WASH complex subunit 4.
   
 
 0.831
S4R4P9_PETMA
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.791
S4RCJ6_PETMA
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.769
S4R8G2_PETMA
DNA topoisomerase II binding protein 1.
    
 
 0.660
S4RKW0_PETMA
VPS26, retromer complex component A.
    
 
 0.588
S4R588_PETMA
KOG2701 domain-containing protein.
    
 
 0.571
S4RE17_PETMA
Si:dkey-119f1.1.
   
 
 0.549
S4R882_PETMA
TBC1 domain family, member 5.
   
 
 0.525
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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