STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RIH6_PETMATrafficking protein, kinesin binding 1a. (945 aa)    
Predicted Functional Partners:
DCTN1
Dynactin subunit 1.
    
 0.854
S4RMQ9_PETMA
Actin related protein 10; Belongs to the actin family.
     
 0.774
S4RPW7_PETMA
FAM193_C domain-containing protein.
    
 0.742
S4RBW2_PETMA
Gamma-aminobutyric acid (GABA) A receptor, gamma 2; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
     
 0.741
RHOT2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.705
S4R6K0_PETMA
Cilia and flagella associated protein 70.
    
 0.705
S4RTY4_PETMA
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.705
S4R964_PETMA
Neur_chan_LBD domain-containing protein.
    
 0.676
S4RZS1_PETMA
Gamma-aminobutyric acid type A receptor beta3 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 0.676
S4R4E4_PETMA
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
  0.669
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.