STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RIP4_PETMAFe2OG dioxygenase domain-containing protein. (126 aa)    
Predicted Functional Partners:
S4RMZ9_PETMA
Uncharacterized protein.
 
      0.900
S4R4L9_PETMA
Endothelial PAS domain protein 1.
    
 0.867
S4RYA8_PETMA
Endothelial PAS domain protein 1.
    
 0.867
S4S011_PETMA
Von Hippel-Lindau tumor suppressor like.
    
 0.749
NPAS1
Neuronal PAS domain protein 1.
    
 0.748
S4RY96_PETMA
PAS_3 domain-containing protein.
    
 0.748
NPAS3
Neuronal PAS domain protein 3.
    
 0.748
S4RTH7_PETMA
Elongin C paralog a; Belongs to the SKP1 family.
     
 0.650
S4RYR7_PETMA
LIM zinc-binding domain-containing protein.
    
 0.611
S4RCX6_PETMA
Cullin 2; Belongs to the cullin family.
     
 0.592
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.