STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RIQ6_PETMAPseudouridine synthase 1. (330 aa)    
Predicted Functional Partners:
S4RJB6_PETMA
Polymerase (RNA) II (DNA directed) polypeptide C.
  
  
 0.946
S4RLR2_PETMA
RNA polymerase I and III subunit C.
  
  
 0.946
S4RTB0_PETMA
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
 
 0.891
S4R6J3_PETMA
Uncharacterized protein.
  
 
 0.828
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.794
S4RA80_PETMA
GMPS ATP-PPase domain-containing protein.
  
 
  0.785
S4RXX4_PETMA
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
  
 0.785
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
   
   0.774
S4R617_PETMA
Protein phosphatase 1, regulatory subunit 8a.
   
 
  0.746
S4RXR2_PETMA
Dicer 1, ribonuclease type III.
  
  
 0.739
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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