S4RIW9_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4RIW9_PETMA

Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (320 aa)

Predicted Functional Partners:

S4RMZ2_PETMA

0.966

S4R9Z5_PETMA

0.963

S4RRB0_PETMA

0.940

S4RGU1_PETMA

0.931

S4R731_PETMA

0.923

S4REV2_PETMA

0.909

S4R983_PETMA

0.901

MRM3

0.896

S4RW97_PETMA

0.887

S4RI23_PETMA

0.886

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRM3	S4R983_PETMA	ENSPMAP00000001757	ENSPMAP00000001764	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.850
MRM3	S4R9Z5_PETMA	ENSPMAP00000001757	ENSPMAP00000002026	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L47.	0.939
MRM3	S4REV2_PETMA	ENSPMAP00000001757	ENSPMAP00000003734	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.904
MRM3	S4RGU1_PETMA	ENSPMAP00000001757	ENSPMAP00000004423	Mitochondrial rRNA methyltransferase 3.	GTP-binding protein 10 (putative).	0.892
MRM3	S4RI23_PETMA	ENSPMAP00000001757	ENSPMAP00000004855	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L24.	0.900
MRM3	S4RIW9_PETMA	ENSPMAP00000001757	ENSPMAP00000005151	Mitochondrial rRNA methyltransferase 3.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.896
MRM3	S4RMZ2_PETMA	ENSPMAP00000001757	ENSPMAP00000006578	Mitochondrial rRNA methyltransferase 3.	Si:zfos-1192g2.3.	0.957
MRM3	S4RRB0_PETMA	ENSPMAP00000001757	ENSPMAP00000007746	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein S18A.	0.854
MRM3	S4RW97_PETMA	ENSPMAP00000001757	ENSPMAP00000009487	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L21.	0.899
S4R731_PETMA	S4R983_PETMA	ENSPMAP00000001011	ENSPMAP00000001764	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.708
S4R731_PETMA	S4REV2_PETMA	ENSPMAP00000001011	ENSPMAP00000003734	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.756
S4R731_PETMA	S4RGU1_PETMA	ENSPMAP00000001011	ENSPMAP00000004423	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	GTP-binding protein 10 (putative).	0.462
S4R731_PETMA	S4RI23_PETMA	ENSPMAP00000001011	ENSPMAP00000004855	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Mitochondrial ribosomal protein L24.	0.658
S4R731_PETMA	S4RIW9_PETMA	ENSPMAP00000001011	ENSPMAP00000005151	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.923
S4R983_PETMA	MRM3	ENSPMAP00000001764	ENSPMAP00000001757	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial rRNA methyltransferase 3.	0.850
S4R983_PETMA	S4R731_PETMA	ENSPMAP00000001764	ENSPMAP00000001011	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.708
S4R983_PETMA	S4R9Z5_PETMA	ENSPMAP00000001764	ENSPMAP00000002026	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L47.	0.988
S4R983_PETMA	S4REV2_PETMA	ENSPMAP00000001764	ENSPMAP00000003734	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.990
S4R983_PETMA	S4RGU1_PETMA	ENSPMAP00000001764	ENSPMAP00000004423	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	GTP-binding protein 10 (putative).	0.856
S4R983_PETMA	S4RI23_PETMA	ENSPMAP00000001764	ENSPMAP00000004855	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L24.	0.983

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About