STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRMS1LBRMS1 like transcriptional repressor. (149 aa)    
Predicted Functional Partners:
S4RM85_PETMA
ARID domain-containing protein.
    
 0.995
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 0.995
S4RFP2_PETMA
Uncharacterized protein.
 
  
   0.916
S4R8K9_PETMA
HDAC_interact domain-containing protein.
    
 0.915
SAP30
Sin3A associated protein 30.
   
 0.877
S4RRX9_PETMA
Retinoblastoma binding protein 4, like.
    
 0.876
S4RV40_PETMA
Hist_deacetyl domain-containing protein.
    
 0.807
S4RWT0_PETMA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.807
S4RXT2_PETMA
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.807
S4R7I4_PETMA
Sin3A-associated protein.
     
 0.728
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.