Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RJ77_PETMAUncharacterized protein. (294 aa)    
Predicted Functional Partners:
S4R540_PETMA
Uncharacterized protein.
 
  
  0.991
S4RK97_PETMA
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.963
S4RGH2_PETMA
GABA(A) receptor-associated protein like 2.
    
 0.956
S4RTS1_PETMA
Uncharacterized protein.
 
     0.947
S4R625_PETMA
Uncharacterized protein.
    
 0.929
S4RKD6_PETMA
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.929
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.908
S4RM63_PETMA
Uncharacterized protein.
 
    
 0.901
S4RP89_PETMA
SKICH domain-containing protein.
     
  0.900
S4RS14_PETMA
Uncharacterized protein.
 
      0.895
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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