S4RJA0_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNF	S4RJA0_PETMA	ENSPMAP00000007533	ENSPMAP00000005282	Cyclin F; Belongs to the cyclin family.	ST13 Hsp70 interacting protein.	0.697
S4R4N4_PETMA	S4R797_PETMA	ENSPMAP00000000163	ENSPMAP00000001077	Heat shock protein 90 alpha family class A member 1.	Uncharacterized protein.	0.838
S4R4N4_PETMA	S4RDV2_PETMA	ENSPMAP00000000163	ENSPMAP00000003384	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 90 alpha family class A member 1.	0.900
S4R4N4_PETMA	S4REL5_PETMA	ENSPMAP00000000163	ENSPMAP00000003647	Heat shock protein 90 alpha family class A member 1.	Uncharacterized protein.	0.972
S4R4N4_PETMA	S4RIK7_PETMA	ENSPMAP00000000163	ENSPMAP00000005039	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 70 family, member 13.	0.858
S4R4N4_PETMA	S4RIP9_PETMA	ENSPMAP00000000163	ENSPMAP00000005081	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.927
S4R4N4_PETMA	S4RJA0_PETMA	ENSPMAP00000000163	ENSPMAP00000005282	Heat shock protein 90 alpha family class A member 1.	ST13 Hsp70 interacting protein.	0.808
S4R4N4_PETMA	S4RPS8_PETMA	ENSPMAP00000000163	ENSPMAP00000007214	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.942
S4R797_PETMA	S4R4N4_PETMA	ENSPMAP00000001077	ENSPMAP00000000163	Uncharacterized protein.	Heat shock protein 90 alpha family class A member 1.	0.838
S4R797_PETMA	S4RDV2_PETMA	ENSPMAP00000001077	ENSPMAP00000003384	Uncharacterized protein.	Heat shock protein 90 alpha family class A member 1.	0.838
S4R797_PETMA	S4REL5_PETMA	ENSPMAP00000001077	ENSPMAP00000003647	Uncharacterized protein.	Uncharacterized protein.	0.979
S4R797_PETMA	S4RIK7_PETMA	ENSPMAP00000001077	ENSPMAP00000005039	Uncharacterized protein.	Heat shock protein 70 family, member 13.	0.932
S4R797_PETMA	S4RIP9_PETMA	ENSPMAP00000001077	ENSPMAP00000005081	Uncharacterized protein.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.943
S4R797_PETMA	S4RJA0_PETMA	ENSPMAP00000001077	ENSPMAP00000005282	Uncharacterized protein.	ST13 Hsp70 interacting protein.	0.709
S4R797_PETMA	S4RPS8_PETMA	ENSPMAP00000001077	ENSPMAP00000007214	Uncharacterized protein.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.948
S4RDV2_PETMA	S4R4N4_PETMA	ENSPMAP00000003384	ENSPMAP00000000163	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 90 alpha family class A member 1.	0.900
S4RDV2_PETMA	S4R797_PETMA	ENSPMAP00000003384	ENSPMAP00000001077	Heat shock protein 90 alpha family class A member 1.	Uncharacterized protein.	0.838
S4RDV2_PETMA	S4REL5_PETMA	ENSPMAP00000003384	ENSPMAP00000003647	Heat shock protein 90 alpha family class A member 1.	Uncharacterized protein.	0.972
S4RDV2_PETMA	S4RIK7_PETMA	ENSPMAP00000003384	ENSPMAP00000005039	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 70 family, member 13.	0.838
S4RDV2_PETMA	S4RIP9_PETMA	ENSPMAP00000003384	ENSPMAP00000005081	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.927