Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
S4RJB9_PETMAH15 domain-containing protein. (184 aa)    
Predicted Functional Partners:
S4RSI2_PETMA
High mobility group box 3b.
    
 0.514
S4RVC8_PETMA
High mobility group box 2a.
    
 0.514
S4RAY0_PETMA
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.491
ENSPMAP00000002379
annotation not available
   
 0.491
ENSPMAP00000002380
annotation not available
   
 0.491
ENSPMAP00000002382
annotation not available
   
 0.491
S4RVQ4_PETMA
SAS-6 centriolar assembly protein.
    
 0.490
S4RWU1_PETMA
Replication protein A2.
    
 0.490
S4RC66_PETMA
Heterochromatin protein 1, binding protein 3.
   
 0.470
S4RPM2_PETMA
Transcription factor A, mitochondrial.
    
 0.465
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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