Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RJE0_PETMAUbiquitin specific peptidase 13; Belongs to the peptidase C19 family. (379 aa)    
Predicted Functional Partners:
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.994
UBB
Ubiquitin B.
    
 0.989
S4R9G1_PETMA
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
    
 0.968
S4RKV5_PETMA
Beclin 1, autophagy related.
    
 0.958
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
    
 0.919
S4RQA2_PETMA
Ion_trans domain-containing protein.
    
 0.916
S4RLY9_PETMA
Uncharacterized protein.
    
 0.868
S4RLZ6_PETMA
Uncharacterized protein.
    
 0.868
S4R5V3_PETMA
tRNA-synt_1 domain-containing protein.
   
   0.867
S4RL39_PETMA
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.857
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (12%) [HD]