Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4RJG3_PETMAKelch-like family member 20. (605 aa)    
Predicted Functional Partners:
S4REM4_PETMA
Sequestosome 1.
    
 0.939
PAM16
Presequence translocase associated motor 16.
    
 
 0.930
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.897
S4RG64_PETMA
Death-associated protein kinase 1.
    
 
 0.886
S4RCN8_PETMA
Nuclear factor, erythroid 2-like 1a.
    
 0.875
S4RI79_PETMA
Nuclear factor, erythroid 2-like 2a.
    
 0.875
S4RYS5_PETMA
Kelch-like family member 26.
    
  0.789
S4R5G5_PETMA
F-box domain-containing protein.
    
  0.761
IVNS1ABP
Influenza virus NS1A binding protein.
    
  0.732
S4R7U3_PETMA
Protein kinase domain-containing protein.
    
 
 0.728
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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