S4RJI3_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RJI3_PETMA

ATP synthase membrane subunit f. (89 aa)

Predicted Functional Partners:

S4R4U1_PETMA

0.999

S4RCJ4_PETMA

0.999

S4RR89_PETMA

0.999

S4RVV1_PETMA

0.999

ATP6

0.998

S4RE88_PETMA

0.996

S4RMP0_PETMA

0.995

S4R6K7_PETMA

0.992

S4RBG8_PETMA

0.992

S4RMC6_PETMA

0.992

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6	S4R4U1_PETMA	ENSPMAP00000011436	ENSPMAP00000000221	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase peripheral stalk subunit d.	0.999
ATP6	S4R6K7_PETMA	ENSPMAP00000011436	ENSPMAP00000000837	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.998
ATP6	S4RBG8_PETMA	ENSPMAP00000011436	ENSPMAP00000002549	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP6	S4RCJ4_PETMA	ENSPMAP00000011436	ENSPMAP00000002926	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase membrane subunit eb.	0.994
ATP6	S4RE88_PETMA	ENSPMAP00000011436	ENSPMAP00000003520	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP6	S4RJI3_PETMA	ENSPMAP00000011436	ENSPMAP00000005366	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase membrane subunit f.	0.998
ATP6	S4RMC6_PETMA	ENSPMAP00000011436	ENSPMAP00000006362	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	Uncharacterized protein.	0.999
ATP6	S4RMP0_PETMA	ENSPMAP00000011436	ENSPMAP00000006476	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase F1 subunit gamma.	0.999
ATP6	S4RR89_PETMA	ENSPMAP00000011436	ENSPMAP00000007725	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase F1 subunit delta.	0.999
ATP6	S4RVV1_PETMA	ENSPMAP00000011436	ENSPMAP00000009341	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	ATP synthase peripheral stalk-membrane subunit b.	0.999
S4R4U1_PETMA	ATP6	ENSPMAP00000000221	ENSPMAP00000011436	ATP synthase peripheral stalk subunit d.	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	0.999
S4R4U1_PETMA	S4R6K7_PETMA	ENSPMAP00000000221	ENSPMAP00000000837	ATP synthase peripheral stalk subunit d.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.997
S4R4U1_PETMA	S4RBG8_PETMA	ENSPMAP00000000221	ENSPMAP00000002549	ATP synthase peripheral stalk subunit d.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
S4R4U1_PETMA	S4RCJ4_PETMA	ENSPMAP00000000221	ENSPMAP00000002926	ATP synthase peripheral stalk subunit d.	ATP synthase membrane subunit eb.	0.999
S4R4U1_PETMA	S4RE88_PETMA	ENSPMAP00000000221	ENSPMAP00000003520	ATP synthase peripheral stalk subunit d.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
S4R4U1_PETMA	S4RJI3_PETMA	ENSPMAP00000000221	ENSPMAP00000005366	ATP synthase peripheral stalk subunit d.	ATP synthase membrane subunit f.	0.999
S4R4U1_PETMA	S4RMC6_PETMA	ENSPMAP00000000221	ENSPMAP00000006362	ATP synthase peripheral stalk subunit d.	Uncharacterized protein.	0.998
S4R4U1_PETMA	S4RMP0_PETMA	ENSPMAP00000000221	ENSPMAP00000006476	ATP synthase peripheral stalk subunit d.	ATP synthase F1 subunit gamma.	0.999
S4R4U1_PETMA	S4RR89_PETMA	ENSPMAP00000000221	ENSPMAP00000007725	ATP synthase peripheral stalk subunit d.	ATP synthase F1 subunit delta.	0.999
S4R4U1_PETMA	S4RVV1_PETMA	ENSPMAP00000000221	ENSPMAP00000009341	ATP synthase peripheral stalk subunit d.	ATP synthase peripheral stalk-membrane subunit b.	0.999