Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RJI4_PETMADynein, axonemal, intermediate chain 2b. (350 aa)    
Predicted Functional Partners:
S4RME0_PETMA
Uncharacterized protein.
   
 
 0.983
S4RJ74_PETMA
Uncharacterized protein.
   
 
 0.955
S4R554_PETMA
GAS domain-containing protein.
   
 
 0.951
S4RHS2_PETMA
WD_REPEATS_REGION domain-containing protein.
   
0.950
S4RSD4_PETMA
Uncharacterized protein.
   
 
 0.950
S4R9V5_PETMA
Uncharacterized protein.
   
 
 0.949
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
   
 
 0.949
S4RTW5_PETMA
IQ motif and ubiquitin domain containing.
   
 
 0.942
S4RY15_PETMA
Cilia and flagella associated protein 52.
   
 0.935
S4RYX0_PETMA
Uncharacterized protein.
   
 
 0.925
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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