Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RJJ7_PETMARAB interacting factor. (133 aa)    
Predicted Functional Partners:
S4R9V8_PETMA
ZRAB1B, member RAS oncogene family a.
    
 
 0.945
S4RWQ4_PETMA
RAB3C, member RAS oncogene family.
    
 
 0.920
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
    
 
 0.899
S4R7S6_PETMA
RAB35, member RAS oncogene family b.
   
 
 0.883
NUDT3
Nudix (nucleoside diphosphate linked moiety X)-type motif 3a.
    
   0.874
S4R639_PETMA
RAB3A interacting protein (rabin3).
    
 
 0.832
S4RW00_PETMA
Bet1 golgi vesicular membrane trafficking protein.
    
 
 0.805
S4RBC8_PETMA
RAB8A, member RAS oncogene family.
    
 
 0.741
S4RPZ5_PETMA
RAB15, member RAS oncogene family.
    
 
 0.741
S4RRN1_PETMA
Uncharacterized protein.
    
 
 0.741
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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