Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RJM6_PETMATyrosine aminotransferase. (188 aa)    
Predicted Functional Partners:
S4R9T3_PETMA
Uncharacterized protein.
   
 
 0.997
S4R9M4_PETMA
Aspartate aminotransferase.
   
 0.981
S4RAL7_PETMA
Aspartate aminotransferase.
   
 0.978
S4RZU8_PETMA
Ubiquitin protein ligase E3A.
    
   0.974
S4RNT8_PETMA
BH4_AAA_HYDROXYL_2 domain-containing protein.
   
 
 0.972
S4RIA8_PETMA
Hcy-binding domain-containing protein.
  
 
 0.959
S4R9B9_PETMA
5-methyltetrahydrofolate-homocysteine methyltransferase.
  
 
 0.958
S4R645_PETMA
Tyrosine hydroxylase 2.
   
 
 0.931
S4RHD9_PETMA
Uncharacterized protein.
     
 0.927
TDO2
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 
 0.881
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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