STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RKF1_PETMARrp44_S1 domain-containing protein. (57 aa)    
Predicted Functional Partners:
S4R7X0_PETMA
Exosome component 4.
   
 0.745
S4R4U0_PETMA
Exosome component 1.
   
 0.710
S4RJI1_PETMA
Exosome component 9.
   
 0.707
S4RYT0_PETMA
Exosome component 7.
   
 0.699
S4RI20_PETMA
Exosome component 8.
   
 0.697
S4RUT2_PETMA
Exosome component 3.
   
 0.688
S4R881_PETMA
Exosome component 2.
    
 0.682
S4RC17_PETMA
HBS1-like translational GTPase.
   
 0.677
S4RZJ8_PETMA
Mtr4 exosome RNA helicase.
   
 0.667
S4R584_PETMA
Ski2_N domain-containing protein.
   
 0.611
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.