Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RKG4_PETMAPSMC3 interacting protein. (217 aa)    
Predicted Functional Partners:
S4RJM3_PETMA
LZ3wCH domain-containing protein.
   
 0.997
S4RX18_PETMA
Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.
   
 0.903
RAD51
DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]
   
 0.848
S4RJN0_PETMA
SPO11 initiator of meiotic double stranded breaks.
   
 
 0.727
S4RV52_PETMA
Uncharacterized protein.
   
  
 0.673
S4REU4_PETMA
MCM domain-containing protein.
      
 0.661
S4RU69_PETMA
Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family.
      
 0.652
S4R7Y5_PETMA
Uncharacterized protein.
      
 0.640
S4RRB5_PETMA
Necdin-like 2.
   
  
 0.631
FKBPL
FKBP prolyl isomerase like.
      
 0.617
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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