STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RKI7_PETMAUncharacterized protein. (155 aa)    
Predicted Functional Partners:
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.908
UBB
Ubiquitin B.
   
 0.866
S4RNL4_PETMA
WWE domain-containing protein.
   
 
 0.852
S4RHT7_PETMA
Uncharacterized protein.
    
 0.832
S4RA80_PETMA
GMPS ATP-PPase domain-containing protein.
   
 
 0.826
S4RQA2_PETMA
Ion_trans domain-containing protein.
   
 0.780
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
   
 0.737
S4RLY9_PETMA
Uncharacterized protein.
   
 0.735
S4RLZ6_PETMA
Uncharacterized protein.
   
 0.735
S4RR03_PETMA
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 0.730
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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