STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYGB-5Globin-5; Belongs to the globin family. (150 aa)    
Predicted Functional Partners:
CYGB-6
Globin-5.
  
 
  
0.900
S4RIQ1_PETMA
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 0.650
S4RLN8_PETMA
FAD-binding FR-type domain-containing protein.
    
 0.650
S4RY75_PETMA
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.417
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.