STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RL31_PETMACAC1F_C domain-containing protein. (263 aa)    
Predicted Functional Partners:
S4RM36_PETMA
Uncharacterized protein.
   
 0.997
S4R9L3_PETMA
Ion_trans domain-containing protein.
 
  
 0.905
S4RHE0_PETMA
Ion_trans domain-containing protein.
 
      0.900
S4RJA1_PETMA
Uncharacterized protein.
 
      0.900
S4RR27_PETMA
Voltage-dependent L-type calcium channel 1c.
 
      0.900
S4RTQ2_PETMA
Uncharacterized protein.
 
      0.900
S4RZ13_PETMA
Voltage-dependent P/Q-type calcium channel 2a.
 
      0.900
S4REI7_PETMA
Ion_trans domain-containing protein.
 
      0.899
S4RYW0_PETMA
Ion_trans domain-containing protein.
 
      0.898
S4R9K9_PETMA
Ion_trans domain-containing protein.
 
  
 0.786
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.