STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RLE8_PETMAUncharacterized protein. (90 aa)    
Predicted Functional Partners:
S4RVX8_PETMA
Uncharacterized protein.
 
      0.869
S4R639_PETMA
RAB3A interacting protein (rabin3).
    
 0.745
S4RW12_PETMA
CoA synthase.
     
 0.667
S4RX27_PETMA
Exocyst complex component 4.
    
 0.639
S4R4G8_PETMA
Rab geranylgeranyltransferase subunit beta.
    
 0.629
S4R9V8_PETMA
ZRAB1B, member RAS oncogene family a.
   
 0.627
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
   
 0.627
S4RMU7_PETMA
Exocyst complex component 3.
    
 0.624
RPL37A
Ribosomal protein L37a.
   
 0.622
S4R920_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.622
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.