STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RM55_PETMAThyroid hormone receptor beta. (396 aa)    
Predicted Functional Partners:
S4RTR1_PETMA
Retinoid X receptor, gamma b.
    
0.990
S4RIU1_PETMA
Uncharacterized protein.
 
  
  0.929
S4RS26_PETMA
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.927
S4REN9_PETMA
Phosphoinositide-3-kinase, regulatory subunit 1 (alpha).
   
 0.889
S4RJD3_PETMA
E1A binding protein p300 a.
    
 0.888
S4RM95_PETMA
Uncharacterized protein.
    
 0.880
S4RC77_PETMA
Uncharacterized protein.
    
 0.878
S4RR69_PETMA
Uncharacterized protein.
    
 0.878
S4RSA1_PETMA
Uncharacterized protein.
    
 0.878
S4RWT0_PETMA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.877
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.