S4RMX3_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RMX3_PETMA

Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (100 aa)

Predicted Functional Partners:

S4RS21_PETMA

0.907

S4RXI9_PETMA

0.907

S4R9I0_PETMA

0.898

S4RES2_PETMA

0.887

S4RQ64_PETMA

0.877

S4RBN6_PETMA

0.868

S4RQ59_PETMA

0.868

S4RLH1_PETMA

0.841

S4RJF2_PETMA

0.827

S4RWV5_PETMA

0.827

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R9I0_PETMA	S4RBN6_PETMA	ENSPMAP00000001861	ENSPMAP00000002617	Uncharacterized protein.	Protein kinase domain-containing protein.	0.692
S4R9I0_PETMA	S4RJF2_PETMA	ENSPMAP00000001861	ENSPMAP00000005334	Uncharacterized protein.	Sema domain-containing protein.	0.726
S4R9I0_PETMA	S4RMX3_PETMA	ENSPMAP00000001861	ENSPMAP00000006559	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.898
S4R9I0_PETMA	S4RQ59_PETMA	ENSPMAP00000001861	ENSPMAP00000007345	Uncharacterized protein.	Protein kinase domain-containing protein.	0.692
S4R9I0_PETMA	S4RS21_PETMA	ENSPMAP00000001861	ENSPMAP00000008009	Uncharacterized protein.	Fibroblast growth factor receptor 2.	0.463
S4R9I0_PETMA	S4RWV5_PETMA	ENSPMAP00000001861	ENSPMAP00000009695	Uncharacterized protein.	Protein kinase domain-containing protein.	0.726
S4R9I0_PETMA	S4RXI9_PETMA	ENSPMAP00000001861	ENSPMAP00000009930	Uncharacterized protein.	Fibroblast growth factor receptor 2.	0.463
S4RBN6_PETMA	S4R9I0_PETMA	ENSPMAP00000002617	ENSPMAP00000001861	Protein kinase domain-containing protein.	Uncharacterized protein.	0.692
S4RBN6_PETMA	S4RJF2_PETMA	ENSPMAP00000002617	ENSPMAP00000005334	Protein kinase domain-containing protein.	Sema domain-containing protein.	0.704
S4RBN6_PETMA	S4RLH1_PETMA	ENSPMAP00000002617	ENSPMAP00000006057	Protein kinase domain-containing protein.	Ig-like domain-containing protein.	0.685
S4RBN6_PETMA	S4RMX3_PETMA	ENSPMAP00000002617	ENSPMAP00000006559	Protein kinase domain-containing protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.868
S4RBN6_PETMA	S4RQ64_PETMA	ENSPMAP00000002617	ENSPMAP00000007350	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.702
S4RBN6_PETMA	S4RS21_PETMA	ENSPMAP00000002617	ENSPMAP00000008009	Protein kinase domain-containing protein.	Fibroblast growth factor receptor 2.	0.403
S4RBN6_PETMA	S4RWV5_PETMA	ENSPMAP00000002617	ENSPMAP00000009695	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.704
S4RBN6_PETMA	S4RXI9_PETMA	ENSPMAP00000002617	ENSPMAP00000009930	Protein kinase domain-containing protein.	Fibroblast growth factor receptor 2.	0.403
S4RES2_PETMA	S4RJF2_PETMA	ENSPMAP00000003704	ENSPMAP00000005334	Protein kinase domain-containing protein.	Sema domain-containing protein.	0.691
S4RES2_PETMA	S4RMX3_PETMA	ENSPMAP00000003704	ENSPMAP00000006559	Protein kinase domain-containing protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.887
S4RES2_PETMA	S4RWV5_PETMA	ENSPMAP00000003704	ENSPMAP00000009695	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.691
S4RJF2_PETMA	S4R9I0_PETMA	ENSPMAP00000005334	ENSPMAP00000001861	Sema domain-containing protein.	Uncharacterized protein.	0.726
S4RJF2_PETMA	S4RBN6_PETMA	ENSPMAP00000005334	ENSPMAP00000002617	Sema domain-containing protein.	Protein kinase domain-containing protein.	0.704