STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RP56_PETMAJmjC domain-containing protein. (472 aa)    
Predicted Functional Partners:
PPARD
Peroxisome proliferator activated receptor delta.
    
 0.828
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 0.818
S4RJF0_PETMA
AT rich interactive domain 1B (SWI1-like).
   
 0.811
S4R9C4_PETMA
Uncharacterized protein.
   
 
 0.803
S4RH82_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
     
 0.792
S4RYV2_PETMA
D4, zinc and double PHD fingers family 2.
     
 0.790
S4RLQ6_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
   
 
 0.715
S4RRJ5_PETMA
SANT domain-containing protein.
   
 
 0.715
S4R848_PETMA
Uncharacterized protein.
   
 
 0.671
S4R7H5_PETMA
Uncharacterized protein.
     
 0.653
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.