STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RPF4_PETMANucleic acid binding protein 1a. (199 aa)    
Predicted Functional Partners:
S4RW63_PETMA
Uncharacterized protein.
    
 0.983
S4RR79_PETMA
Integrator complex subunit 5.
    
  0.973
S4RBI7_PETMA
Uncharacterized protein.
    
  0.917
S4RW18_PETMA
DUF3677 domain-containing protein.
    
  0.917
S4RN27_PETMA
Integrator complex subunit 9.
    
 0.762
S4RMG8_PETMA
Lactamase_B domain-containing protein.
   
 0.758
S4RDL1_PETMA
Integrator complex subunit 12.
   
 
  0.693
S4RCB0_PETMA
Integrator complex subunit 7.
     
 0.692
S4RV21_PETMA
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.690
S4RA67_PETMA
Integrator complex subunit 13.
     
 0.674
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.