STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RQA8_PETMADnaJ (Hsp40) homolog, subfamily C, member 5aa. (178 aa)    
Predicted Functional Partners:
S4RS47_PETMA
Pleiotropic regulator 1.
    
 
 0.989
S4RKR2_PETMA
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.984
S4R7T9_PETMA
C2 domain-containing protein.
     
 0.980
S4RB87_PETMA
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.980
S4RIH3_PETMA
PDZ domain-containing protein.
     
 0.980
S4RLQ4_PETMA
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 
 0.964
S4RTX3_PETMA
Uncharacterized protein.
    
 
 0.943
S4RLF8_PETMA
Pre-mRNA processing factor 8.
    
 
 0.939
S4R4Z7_PETMA
DEAQ box RNA-dependent ATPase 1.
    
 
 0.918
S4RWQ3_PETMA
OB_NTP_bind domain-containing protein.
    
 
 0.918
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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