STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RR67_PETMAABC transporter domain-containing protein. (250 aa)    
Predicted Functional Partners:
S4RXM0_PETMA
ABC transmembrane type-1 domain-containing protein.
 
   
 0.929
S4RYT4_PETMA
ABC transmembrane type-1 domain-containing protein.
 
   
 0.927
S4RFP9_PETMA
Uncharacterized protein.
 
   
 0.887
S4RUM9_PETMA
ABC transmembrane type-1 domain-containing protein.
 
   
 0.884
S4RC39_PETMA
Uncharacterized protein.
 
   
 0.844
S4R7R6_PETMA
Uncharacterized protein.
   
 0.686
S4RCT9_PETMA
Calreticulin.
   
 0.686
S4RLH8_PETMA
SCP2 domain-containing protein.
   
 0.686
S4RTZ2_PETMA
Calreticulin.
   
 0.686
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
  
 0.680
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.