STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SODM_PETMASuperoxide dismutase [Mn], mitochondrial; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. (232 aa)    
Predicted Functional Partners:
S4RTH4_PETMA
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.975
S4RXR2_PETMA
Dicer 1, ribonuclease type III.
   
 
 0.975
S4RBS3_PETMA
Mitochondrial ribosomal protein L15.
  
 
 0.973
S4REV2_PETMA
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.971
S4RRB0_PETMA
Mitochondrial ribosomal protein S18A.
   
 
 0.971
S4RZT5_PETMA
Uncharacterized protein.
   
 
 0.970
S4RUR5_PETMA
Mitochondrial ribosomal protein L46.
   
 
 0.968
SUCLG1
Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.
   
 
 0.967
S4R9Z5_PETMA
Mitochondrial ribosomal protein L47.
   
 
 0.967
S4RV01_PETMA
Si:dkey-159f12.2; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.967
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.