STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RRR6_PETMADEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (486 aa)    
Predicted Functional Partners:
APOA1BP
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
   
 0.999
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.998
S4RL46_PETMA
LSM14A mRNA processing body assembly factor a.
   
 
 0.997
S4RLY5_PETMA
Uncharacterized protein.
   
 0.997
S4RYN4_PETMA
CCR4-NOT transcription complex, subunit 1.
   
 0.992
S4RYH0_PETMA
CCR4-NOT transcription complex, subunit 4b.
    
 0.981
S4RWJ9_PETMA
Enhancer of mRNA decapping 4.
    
 0.977
S4RDH5_PETMA
Nocturnin a.
    
 0.959
S4RM54_PETMA
CCR4-NOT transcription complex, subunit 6-like.
    
 0.959
S4RLD4_PETMA
LSM12 homolog a.
    
 
 0.958
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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