STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RRY1_PETMASodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1716 aa)    
Predicted Functional Partners:
S4RM36_PETMA
Uncharacterized protein.
   
 0.997
S4RT27_PETMA
WD_REPEATS_REGION domain-containing protein.
    
 0.740
IFT122
Intraflagellar transport 122.
   
 0.731
S4RCS6_PETMA
WD_REPEATS_REGION domain-containing protein.
    
 0.723
S4RZK2_PETMA
WD_REPEATS_REGION domain-containing protein.
    
 0.721
S4RKP1_PETMA
Calcium channel, voltage-dependent, gamma subunit 1a.
    
 0.693
S4RE36_PETMA
GuKc domain-containing protein.
   
 0.692
S4RW72_PETMA
SH3 domain-containing protein.
   
 0.692
S4R9K9_PETMA
Ion_trans domain-containing protein.
  
0.616
S4R815_PETMA
VGCC_alpha2 domain-containing protein.
   
 0.607
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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