STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RS24_PETMASingle stranded DNA binding protein 3b. (171 aa)    
Predicted Functional Partners:
S4RII8_PETMA
Uncharacterized protein.
    
 
 0.901
LDB2
LIM domain binding 2.
    
 
 0.901
S4S184_PETMA
LIM zinc-binding domain-containing protein.
    
 
 0.715
S4RX66_PETMA
LIM homeobox 1b.
    
 
 0.579
S4RFN6_PETMA
LIM domain only 4b.
    
 
 0.574
S4RAE7_PETMA
Uncharacterized protein.
    
 
 0.564
S4RJD8_PETMA
LIM domain only 2 (rhombotin-like 1).
    
 
 0.499
S4RB77_PETMA
BHLH domain-containing protein.
    
 
 0.439
S4R5R3_PETMA
PHD-type domain-containing protein.
    
 
 0.430
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.