S4RSD8_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RSD8_PETMA

Transmembrane protein 41aa. (225 aa)

Predicted Functional Partners:

S4R5N2_PETMA

0.819

S4RGA8_PETMA

0.817

PISD

0.810

S4RRJ6_PETMA

0.810

S4RDE9_PETMA

0.728

S4RNB0_PETMA

0.728

S4R8S3_PETMA

0.699

S4RKK1_PETMA

0.687

S4RLU2_PETMA

0.687

DLST

0.656

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLST	S4RKK1_PETMA	ENSPMAP00000002592	ENSPMAP00000005734	Lipoyl-binding domain-containing protein.	Thioredoxin reductase 3.	0.990
DLST	S4RLU2_PETMA	ENSPMAP00000002592	ENSPMAP00000006178	Lipoyl-binding domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.997
DLST	S4RRJ6_PETMA	ENSPMAP00000002592	ENSPMAP00000007832	Lipoyl-binding domain-containing protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.920
DLST	S4RSD8_PETMA	ENSPMAP00000002592	ENSPMAP00000008127	Lipoyl-binding domain-containing protein.	Transmembrane protein 41aa.	0.656
PISD	S4RSD8_PETMA	ENSPMAP00000002777	ENSPMAP00000008127	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	Transmembrane protein 41aa.	0.810
S4R5N2_PETMA	S4RSD8_PETMA	ENSPMAP00000000512	ENSPMAP00000008127	WD repeat domain 46.	Transmembrane protein 41aa.	0.819
S4R8S3_PETMA	S4RKK1_PETMA	ENSPMAP00000001604	ENSPMAP00000005734	Selenophosphate synthetase 1.	Thioredoxin reductase 3.	0.880
S4R8S3_PETMA	S4RLU2_PETMA	ENSPMAP00000001604	ENSPMAP00000006178	Selenophosphate synthetase 1.	Dihydrolipoyl dehydrogenase.	0.827
S4R8S3_PETMA	S4RRJ6_PETMA	ENSPMAP00000001604	ENSPMAP00000007832	Selenophosphate synthetase 1.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.545
S4R8S3_PETMA	S4RSD8_PETMA	ENSPMAP00000001604	ENSPMAP00000008127	Selenophosphate synthetase 1.	Transmembrane protein 41aa.	0.699
S4RDE9_PETMA	S4RSD8_PETMA	ENSPMAP00000003231	ENSPMAP00000008127	Acylglycerol kinase.	Transmembrane protein 41aa.	0.728
S4RGA8_PETMA	S4RKK1_PETMA	ENSPMAP00000004240	ENSPMAP00000005734	Uncharacterized protein.	Thioredoxin reductase 3.	0.879
S4RGA8_PETMA	S4RLU2_PETMA	ENSPMAP00000004240	ENSPMAP00000006178	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.879
S4RGA8_PETMA	S4RSD8_PETMA	ENSPMAP00000004240	ENSPMAP00000008127	Uncharacterized protein.	Transmembrane protein 41aa.	0.817
S4RKK1_PETMA	DLST	ENSPMAP00000005734	ENSPMAP00000002592	Thioredoxin reductase 3.	Lipoyl-binding domain-containing protein.	0.990
S4RKK1_PETMA	S4R8S3_PETMA	ENSPMAP00000005734	ENSPMAP00000001604	Thioredoxin reductase 3.	Selenophosphate synthetase 1.	0.880
S4RKK1_PETMA	S4RGA8_PETMA	ENSPMAP00000005734	ENSPMAP00000004240	Thioredoxin reductase 3.	Uncharacterized protein.	0.879
S4RKK1_PETMA	S4RRJ6_PETMA	ENSPMAP00000005734	ENSPMAP00000007832	Thioredoxin reductase 3.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.897
S4RKK1_PETMA	S4RSD8_PETMA	ENSPMAP00000005734	ENSPMAP00000008127	Thioredoxin reductase 3.	Transmembrane protein 41aa.	0.687
S4RLU2_PETMA	DLST	ENSPMAP00000006178	ENSPMAP00000002592	Dihydrolipoyl dehydrogenase.	Lipoyl-binding domain-containing protein.	0.997