STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RSU1_PETMADUF4206 domain-containing protein. (195 aa)    
Predicted Functional Partners:
S4RAR0_PETMA
Phosphatidylinositol 3-kinase, catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.
    
 
 0.978
S4RKV5_PETMA
Beclin 1, autophagy related.
    
 
 0.972
S4RFU2_PETMA
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 
 0.728
S4RTJ7_PETMA
Protein kinase domain-containing protein.
    
 
 0.728
ATG14
Autophagy related 14.
    
 
 0.723
S4RSG4_PETMA
VPS39 subunit of HOPS complex.
   
 
 0.658
S4RKA1_PETMA
Pleckstrin homology domain containing, family M (with RUN domain) member 1.
  
  
 
0.617
S4RJZ6_PETMA
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.608
S4RST2_PETMA
ADP-ribosylation factor-like 8Ba; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.608
S4RHQ9_PETMA
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.585
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.