STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RT99_PETMACasein kinase 1, epsilon; Belongs to the protein kinase superfamily. (351 aa)    
Predicted Functional Partners:
S4RQR4_PETMA
LTV1 ribosome biogenesis factor.
    
 0.996
S4R776_PETMA
Bystin-like.
    
 0.988
S4RFM0_PETMA
Uncharacterized protein.
    
 0.985
S4RH05_PETMA
Cryptochrome circadian regulator 1a.
    
 0.985
TSR1
TSR1 ribosome maturation factor.
    
 0.970
S4RCM1_PETMA
Uncharacterized protein.
    
 0.946
S4RH78_PETMA
BHLH domain-containing protein.
    
 0.946
S4RTQ6_PETMA
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.944
RPS20
Ribosomal protein S20.
    
 0.923
S4RJV4_PETMA
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.922
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.