STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RTA1_PETMABeta_elim_lyase domain-containing protein. (166 aa)    
Predicted Functional Partners:
S4RTP3_PETMA
Thr_synth_N domain-containing protein.
  
 0.939
S4RX62_PETMA
Aminotran_5 domain-containing protein.
    
 0.936
S4RMK0_PETMA
Uncharacterized protein.
    
 0.905
S4RA84_PETMA
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.896
S4RNL3_PETMA
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.896
S4RLU2_PETMA
Dihydrolipoyl dehydrogenase.
    
 0.889
S4RDK6_PETMA
Glutamic pyruvate transaminase (alanine aminotransferase) 2.
  
 
 0.888
S4RDJ4_PETMA
DAO domain-containing protein.
    
 0.885
S4RWN3_PETMA
Phosphoserine phosphatase.
    
 0.885
PDPR
Pyruvate dehydrogenase phosphatase regulatory subunit.
   
 0.880
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.