STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RTT3_PETMAtRNA methyltransferase 11 homolog. (410 aa)    
Predicted Functional Partners:
S4RJ54_PETMA
tRNA methyltransferase subunit 11-2.
   
 0.991
S4RRJ1_PETMA
WD repeat domain 36.
   
    0.900
S4RJK3_PETMA
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.
    
 0.831
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.816
S4RL79_PETMA
RNA terminal phosphate cyclase-like 1.
   
    0.775
S4RN03_PETMA
WD repeat domain 75.
   
    0.773
S4RJG5_PETMA
Transducin (beta)-like 3.
   
  
 0.763
S4RND1_PETMA
WD repeat domain 43.
   
    0.754
S4RZ74_PETMA
UTP6 small subunit processome component.
   
    0.752
S4R7L5_PETMA
GN3L_Grn1 domain-containing protein.
   
    0.746
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.