STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RUF3_PETMATBC1 domain family, member 32. (1311 aa)    
Predicted Functional Partners:
S4R6F3_PETMA
Cilia and flagella associated protein 20.
    
 
 0.669
S4RBP0_PETMA
Cilia and flagella associated protein 20.
    
 
 0.669
S4RQL0_PETMA
UEV domain-containing protein.
      
 0.662
S4RP91_PETMA
Uncharacterized protein.
   
  
 0.627
S4RKE0_PETMA
Family with sequence similarity 149 member B1.
    
 
 0.590
S4RA20_PETMA
Uncharacterized protein.
      
 0.479
S4RQU2_PETMA
Beta-hexosaminidase.
    
   0.473
S4RMK2_PETMA
Uncharacterized protein.
    
 
 0.449
S4RVX9_PETMA
WD repeat domain 90.
    
 
 0.449
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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