STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RV77_PETMACollagen type XVIII alpha 1 chain a. (1350 aa)    
Predicted Functional Partners:
S4RCQ8_PETMA
Matrix metallopeptidase 2.
    
 0.477
S4RJC9_PETMA
ZnMc domain-containing protein.
    
 0.477
S4RUI1_PETMA
Uncharacterized protein.
    
 0.477
S4RS62_PETMA
Uncharacterized protein.
  
 
0.468
S4RL43_PETMA
Uncharacterized protein.
   
0.460
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
    
 0.457
S4RPX1_PETMA
Collagen, type VI, alpha 1.
  
0.445
S4RSP9_PETMA
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
   
 
 0.441
S4RGC0_PETMA
Nucleolin.
    
 
 0.428
S4RLD1_PETMA
Fibrillar collagen NC1 domain-containing protein.
  
 
0.421
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.