STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RVC8_PETMAHigh mobility group box 2a. (194 aa)    
Predicted Functional Partners:
S4RKV5_PETMA
Beclin 1, autophagy related.
    
 0.870
S4RUB8_PETMA
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.786
S4RN62_PETMA
Actin-like 6A; Belongs to the actin family.
   
 0.755
S4RIB7_PETMA
General transcription factor IIH, polypeptide 3.
    
 0.750
S4RQI3_PETMA
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.750
S4RK75_PETMA
Excision repair cross-complementation group 3.
   
 0.749
S4RK49_PETMA
Polymerase (RNA) mitochondrial (DNA directed).
    
 0.725
S4R8U4_PETMA
General transcription factor IIH, polypeptide 2.
    
 0.715
S4RM85_PETMA
ARID domain-containing protein.
    
 0.715
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 0.715
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.